SNP Profiles of IMC 14   View Data

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 1234567891011121314
_Input profile
TTCCACGTCTGGACCGAGTTAGGGAACC
1._IMC_14
__ACGTCT_AC_AGTT__AA_
2._RUQ_1634
__AC_____AG_AG___
3._IMC_14
__ACGTCT_AACGAGTT__AA_
4._IMC_14
__ACGTCT_AACGAGTT__AA_
5._IMC_14
__ACGTCT_AACGAGTT__AA_
6._IMC_14
__ACGTCT_AACGAGTT__AA_
7._IMC_14
__ACGTCT_AACGAGTT__AA_
8._IMC_14
__ACGTCT_AACGAGTT__AA_
9._IMC_14
__ACGTCT_AACGAGTT__AA_
10._IMC_14
__ACGTCT_AACGAGTT__AA_
11._IMC_14
__ACGTCT_AACGAGTT__AA_
12._IMC_14
__ACGTCT_AACGAGTT__AA_
13._IMC_14
__ACGTCT_AACGAGTT__AA_
14._IMC_14
__ACGTCT_AACGAGTT__AA_
15._IMC_14
__ACGTCT_AACGAGTT__AA_
16._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
17._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
18._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
19._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
20._GC-04-054-3-18
TTCCACGTCTGGAACGAGTTAGGGAACC
21._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
22._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
23._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
24._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
25._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
26._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
27._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
28._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
29._RUQ_1634
__CCGTCT_ACCCAACT__AA_
30._GC-03-30-3-9
AACCACACAGGGACCGAGAAAGGGAAGG
31._RUQ_1634
AACCACACAGGGACCGAGAAAGGGAAGG
 1516171819202122232425262728
_Input profile
AACCCTGGGGAACCCCTTGGGGTTACCC
1._IMC_14
AACCCTGGGGAA_CC_GG___CC
2._RUQ_1634
_CC__GGAACC_TTGGGG_ACCC
3._IMC_14
AACCCTGGGGAA_CC_GG___CC
4._IMC_14
AACCCTGGGGAA_CC_GG___CC
5._IMC_14
AACCCTGGGGAA_CC_GG___CC
6._IMC_14
AACCCTGGGGAA_CC_GG___CC
7._IMC_14
AACCCTGGGGAA_CC_GG___CC
8._IMC_14
AACCCTGGGGAA_CC_GG___CC
9._IMC_14
AACCCTGGGGAA_CC_GG___CC
10._IMC_14
AACCCTGGGGAA_CC_GG___CC
11._IMC_14
AACCCTGGGGAA_CC_GG___CC
12._IMC_14
AACCCTGGGGAA_CC_GG___CC
13._IMC_14
AACCCTGGGGAA_CC_GG___CC
14._IMC_14
AACCCTGGGGAA_CC_GG___CC
15._IMC_14
AACCCTGGGGAA_CC_GG___CC
16._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
17._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
18._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
19._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
20._GC-04-054-3-18
AACCCTGGGGAACCCCCCGGGGTTACCC
21._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
22._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
23._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
24._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
25._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
26._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
27._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
28._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
29._RUQ_1634
AGCCCTTTCCCC_CT_GG___GG
30._GC-03-30-3-9
_CC_CCGGAAGGGG_CCGGAAACGG
31._RUQ_1634
_CC_CCGGAAGGGG_CCGGAAACGG
 2930313233343536373839404142
_Input profile
CCCCAACCCTGGGGTTGTTTCCTTCGAG
1._IMC_14
_CCAA_CT___GT__TTCGAG
2._RUQ_1634
__AACC____GT___CG_
3._IMC_14
_CCAA_CT___GT__TTCGAG
4._IMC_14
_CCAA_CT___GT__TTCGAG
5._IMC_14
_CCAA_CT___GT__TTCGAG
6._IMC_14
_CCAA_CT___GT__TTCGAG
7._IMC_14
_CCAA_CT___GT__TTCGAG
8._IMC_14
_CCAA_CT___GT__TTCGAG
9._IMC_14
_CCAA_CT___GT__TTCGAG
10._IMC_14
_CCAA_CT______TTCGAG
11._IMC_14
_CCAA_CT______TTCGAG
12._IMC_14
_CCAA_CT______TTCGAG
13._IMC_14
_CCAA_CT______TTCGAG
14._IMC_14
_CCAA_CT______TTCGAG
15._IMC_14
_CCAA_CT______TTCGAG
16._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
17._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
18._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
19._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
20._GC-04-054-3-18
CCCCAACCCTGGGGTTGTTTCCTTCGAG
21._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
22._GC-03-030-3-09
CCCCAACCCTGGGGTT_TTCCTTCGAG
23._GC-03-030-3-09
CCCCAACCCTGGGGTT_TTCCTTCGAG
24._GC-03-030-3-09
CCCCAACCCTGGGGTTGT__TTCGAG
25._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
26._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
27._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
28._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
29._RUQ_1634
_CCAG_CT___TT__CT_AG
30._GC-03-30-3-9
_GGAA_AGCCGG_AAAAGGAACGAG
31._RUQ_1634
_GGAA_AGCCGG_AAAAGGAACGAG

Input profile: IMC_14 RUQ_1634

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_14

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

2._IMC_14 RUQ_1634

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

4._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

6._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

7._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

8._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

9._IMC_14

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

10._IMC_14

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

11._IMC_14

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

12._IMC_14

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

13._IMC_14

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

14._IMC_14

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

15._IMC_14

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

16._IMC_14 GC-03-030-3-09

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._IMC_14 GC-03-030-3-09

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

18._IMC_14 GC-03-030-3-09

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

19._IMC_14 GC-03-030-3-09

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._IMC_14 GC-04-054-3-18

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

21._IMC_14 GC-03-030-3-09

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._IMC_14 GC-03-030-3-09

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

23._IMC_14 GC-03-030-3-09

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._IMC_14 GC-03-030-3-09

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._IMC_14 GC-03-030-3-09

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._IMC_14 GC-03-030-3-09

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

27._IMC_14 GC-03-030-3-09

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._IMC_14 GC-03-030-3-09

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

29._IMC_14 RUQ_1634

63 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

50 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

50 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484